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Total publications for 2022: 22

Buss P, Miller M, Fuller A, Haw A, Thulson E, Olea-Popelka F and Meyer L. Effect of Azaperone on Induction Times in Etorphine-Immobilized White Rhinoceros (Ceratotherium simum). jwdi (2022) 58:245-247.

Pahar M, Klopper M, Warren R and Niesler T. COVID-19 detection in cough, breath and speech using deep transfer learning and bottleneck features. Computers in Biology and Medicine (2022) 141:105153.

Dippenaar A, Ismail N, Grobbelaar M, Oostvogels S, de Vos M, Streicher E M, Heupink T H, van Rie A and Warren R M. Optimizing liquefaction and decontamination of sputum for DNA extraction from Mycobacterium tuberculosis. Tuberculosis (2022) 132:102159.

Sc M, Sk M, A F-G, A P-N, M M, H M, M F, K H, M E, O N, M T, G W, K N, G C, M H and Tj S. Prospective multicentre head-to-head validation of host blood transcriptomic biomarkers for pulmonary tuberculosis by real-time PCR. (2022) 2.

Mendelsohn S C, Mbandi S K, Fiore-Gartland A, Penn-Nicholson A, Musvosvi M, Mulenga H, Fisher M, Hadley K, Erasmus M, Nombida O, Tameris Ml, Walzl G, Naidoo K, Churchyard G, Hatherill M and Scriba T J. Prospective multicentre head-to-head validation of host blood transcriptomic biomarkers for pulmonary tuberculosis by real-time PCR. Commun Med (2022) 2:26.

Nathavitharana R R, Garcia-Basteiro A L, Ruhwald M, Cobelens F and Theron G. Reimagining the status quo: How close are we to rapid sputum-free tuberculosis diagnostics for all? eBioMedicine (2022) 78:103939.

Webber T, Ronacher K, Conradie-Smit M and Kleynhans La. Interplay Between the Immune and Endocrine Systems in the Lung: Implications for TB Susceptibility. (2022) 13.

Mendelsohn S C, Fiore-Gartland A, Awany D, Mulenga H, Mbandi S K, Tameris Ml, Walzl G, Naidoo K, Churchyard G, Scriba T J and Hatherill M. Clinical predictors of pulmonary tuberculosis among South African adults with HIV. eClinicalMedicine (2022) 45:101328.

Bateson A, Ortiz Canseco J, McHugh T D, Witney A A, Feuerriegel S, Merker M, Kohl T A, Utpatel C, Niemann S, Andres Sn, Kranzer K, Maurer F P, Ghodousi A, Borroni E, Cirillo D M, Wijkander M, Toro J C, Groenheit R, Werngren J, Machado D, Viveiros M, Warren R M, Sirgel F, Dippenaar A, Köser C U, Sun E and Timm J. Ancient and recent differences in the intrinsic susceptibility of Mycobacterium tuberculosis complex to pretomanid. Journal of Antimicrobial Chemotherapy (2022):dkac070.

Verboven L, Calders T, Callens S, Black J, Maartens G, Dooley K E, Potgieter S, Warren R M, Laukens K and Van Rie A. A treatment recommender clinical decision support system for personalized medicine: method development and proof-of-concept for drug resistant tuberculosis. BMC Medical Informatics and Decision Making (2022) 22:56.

Mulenga H, Fiore-Gartland A, Mendelsohn S C, Penn-Nicholson A, Mbandi S K, Borate B, Musvosvi M, Tameris Ml, Walzl G, Naidoo K, Churchyard G, Scriba T J and Hatherill M. The effect of host factors on discriminatory performance of a transcriptomic signature of tuberculosis risk. eBioMedicine (2022) 77:103886.

Esmail A, Oelofse S, Lombard C, Perumal R, Mbuthini L, Goolam Mahomed A, Variava E, Black J, Oluboyo P, Gwentshu N, Ngam E, Ackerman T, Marais L, Mottay L, Meier S, Pooran A, Tomasicchio M, Te Riele J, Derendinger B, Ndjeka N, Maartens G, Warren R, Martinson N and Dheda K. An All-Oral 6-Month Regimen for Multidrug-Resistant TB (the NExT Study): A Multicenter, Randomized Controlled Trial. Am J Respir Crit Care Med (2022).

Carney T, Rooney J A, Niemand N, Myers B, Theron D, Wood R, White L F, Meade C S, Chegou N N, Ragan E, Walzl G, Horsburgh R, Warren R M and Jacobson K R. Transmission Of Tuberculosis Among illicit drug use Linkages (TOTAL): A cross-sectional observational study protocol using respondent driven sampling. PLOS ONE (2022) 17:e0262440.

Jacobs R, Awoniyi D O, Baumann R, Stanley K, McAnda S, Kaempfer S, Malherbe S T, Singh M, Walzl G, Chegou N N, Walzl G, Chegou N N, Kriel M, van der Spuy G, Loxton A G, Stanley K, Malherbe S T, Kriel B, Sutherland J S, Owolabi O, Sillah A, Mendy J, Gindeh A, Donkor S, Togun T, Ota M, Crampin A C, Simukonda F, Amberbir A, Chilongo F, Houben R, Kassa D, Gebrezgeabher A, Mesfin G, Belay Y, Gebremichael G, Alemayehu Y, van der Vyver M, Amutenya F N, Nelongo J N, Monye L, Sheehama J A, Iipinge S, Mayanja-Kizza H, Namuganga A R, Muzanye G, Nsereko M, Peters P, Howe R, Mihret A, Bekele Y, Tessema B, Yamuah L, Ottenhoff T H M, Geluk A, Franken K, van der Ploeg-van Schip J J, Corstjens P L A M, Tjon Kon Fat E M, de Dood C J, Rosenkrands I, Aagaard C, Kaufmann S H E, Esterhuyse M M, Cliff J M and Dockrell H M. Concurrent evaluation of cytokines improves the accuracy of antibodies against Mycobacterium tuberculosis antigens in the diagnosis of active tuberculosis. Tuberculosis (2022) 133:102169.

Clarke C, Cooper D V, Miller M A and Goosen W J. Detection of Mycobacterium tuberculosis complex DNA in oronasal swabs from infected African buffaloes (Syncerus caffer). Sci Rep (2022) 12:1834.

Foster I, Sullivan A, Makanda G, Schoeman I, Tisile P, van der Westhuizen H-M, Theron G and Nathavitharana R R. The role of counselling in tuberculosis diagnostic evaluation and contact tracing: scoping review and stakeholder consultation of knowledge and research gaps. BMC Public Health (2022) 22:190.

Johnson R, Sharma J R, Ramharack P, Mangwana N, Kinnear C, Viraragavan A, Glanzmann B, Louw J, Abdelatif N, Reddy T, Surujlal-Naicker S, Nkambule S, Mahlangeni N, Webster C, Mdhluli M, Gray G, Mathee A, Preiser W, Muller C and Street R. Tracking the circulating SARS-CoV-2 variant of concern in South Africa using wastewater-based epidemiology. Sci Rep (2022) 12:1182.

Goossens S N, Heupink T H, De Vos E, Dippenaar A, De Vos M, Warren R and Van Rie A. Detection of minor variants in Mycobacterium tuberculosis whole genome sequencing data. Briefings in Bioinformatics (2022) 23:bbab541.

Simba H, Tromp G, Sewram V, Mathew C G, Chen W C and Kuivaniemi H. Esophageal Cancer Genomics in Africa: Recommendations for Future Research. (2022) 13.

Schurz H, Glanzmann B, Bowker N, van Toorn R, Solomons R, Schoeman J, van Helden P D, Kinnear C J, Hoal E G and Möller M. Deciphering Genetic Susceptibility to Tuberculous Meningitis. (2022) 13.

Nathavitharana R R, Mishra H, Sullivan A, Hurwitz S, Lederer P, Meintjes J, Nardell E and Theron G. Predicting airborne infection risk: Association between personal ambient carbon dioxide level monitoring and incidence of tuberculosis infection in South African health workers. Clinical Infectious Diseases (2022):ciac183.

Madhvi A, Mishra H, Chegou N N, Mkhonza M N, Ndou S, Tromp G and Baker B. Comparison of Cytokines Expression from Human Monocyte-Derived Macrophages Infected with Different Species of Mycobacteria. (2022) 42:141-152.